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PPP1R16B protein phosphatase 1 regulatory subunit 16B [ Emydura macquarii macquarii ]

Gene ID: 137157172, updated on 28-Aug-2024

Summary

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Gene symbol
PPP1R16B
Gene description
protein phosphatase 1 regulatory subunit 16B
Gene type
protein coding
RefSeq status
MODEL
Organism
Emydura macquarii macquarii (sub-species: macquarii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Pleurodira; Chelidae; Emydura
Orthologs
human mouse all
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Genomic context

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See PPP1R16B in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current CSIRO-AGI_Emac_v2 (GCF_026122565.2) Unplaced Scaffold NW_027131620.1 (19874163..19961463, complement)

NW_027131620.1Genomic Context describing neighboring genes Neighboring gene protein FAM83D-A-like Neighboring gene protein FAM83D-like Neighboring gene uncharacterized LOC137157388 Neighboring gene uncharacterized LOC137157173 Neighboring gene uncharacterized LOC137157268 Neighboring gene actin related protein 5 Neighboring gene Rho GTPase activating protein 40

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_027131620 Unplaced Scaffold Reference CSIRO-AGI_Emac_v2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables enzyme inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables myosin phosphatase regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in establishment of endothelial barrier IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of sprouting angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein phosphatase 1 regulatory inhibitor subunit 16B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_026122565.2-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CSIRO-AGI_Emac_v2

Genomic

  1. NW_027131620.1 Reference CSIRO-AGI_Emac_v2

    Range
    19874163..19961463 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_067554408.1 → XP_067410509.1  protein phosphatase 1 regulatory inhibitor subunit 16B

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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