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spef2 sperm flagellar 2 [ Channa argus (northern snakehead) ]

Gene ID: 137136762, updated on 23-Sep-2024

Summary

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Gene symbol
spef2
Gene description
sperm flagellar 2
Locus tag
Q8A73_011668
Gene type
protein coding
RefSeq status
MODEL
Organism
Channa argus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Anabantiformes; Channoidei; Channidae; Channa
Orthologs
human zebrafish all
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Genomic context

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See spef2 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
37
Annotation release Status Assembly Chr Location
RS_2024_08 current Channa argus male v1.0 (GCF_033026475.1) 11 NC_090207.1 (9194721..9212301, complement)

Chromosome 11 - NC_090207.1Genomic Context describing neighboring genes Neighboring gene alpha-ketoglutarate dehydrogenase subunit 4 Neighboring gene pyridoxal (pyridoxine, vitamin B6) phosphatase Neighboring gene LIF receptor subunit alpha a Neighboring gene centrosomal protein 78 Neighboring gene cysteine dioxygenase, type I

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_090207.1 Chromosome 11 Reference Channa argus male v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sperm axoneme assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in manchette IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sperm midpiece IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sperm flagellar protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_033026475.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Channa argus male v1.0 Primary Assembly

Genomic

  1. NC_090207.1 Reference Channa argus male v1.0 Primary Assembly

    Range
    9194721..9212301 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_067522441.1 → XP_067378542.1  sperm flagellar protein 2 isoform X2

  2. XM_067522444.1 → XP_067378545.1  sperm flagellar protein 2 isoform X5

  3. XM_067522440.1 → XP_067378541.1  sperm flagellar protein 2 isoform X1

  4. XM_067522443.1 → XP_067378544.1  sperm flagellar protein 2 isoform X4

  5. XM_067522442.1 → XP_067378543.1  sperm flagellar protein 2 isoform X3

  6. XM_067522445.1 → XP_067378546.1  sperm flagellar protein 2 isoform X6

RNA

  1. XR_010915623.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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