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cfap43 cilia and flagella associated protein 43 [ Channa argus (northern snakehead) ]

Gene ID: 137134118, updated on 23-Sep-2024

Summary

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Gene symbol
cfap43
Gene description
cilia and flagella associated protein 43
Locus tag
Q8A73_001274
Gene type
protein coding
RefSeq status
MODEL
Organism
Channa argus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Anabantiformes; Channoidei; Channidae; Channa
Orthologs
human zebrafish all
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Genomic context

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See cfap43 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
38
Annotation release Status Assembly Chr Location
RS_2024_08 current Channa argus male v1.0 (GCF_033026475.1) 1 NC_090197.1 (37979244..37998021, complement)

Chromosome 1 - NC_090197.1Genomic Context describing neighboring genes Neighboring gene STE20-like kinase a Neighboring gene collagen alpha-1(XVII) chain-like Neighboring gene SWI5-dependent homologous recombination repair protein 1 Neighboring gene glutathione S-transferase omega-1-like Neighboring gene inositol 1,4,5-trisphosphate receptor interacting protein Neighboring gene cholesterol 25-hydroxylase-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_090197.1 Chromosome 1 Reference Channa argus male v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sperm axoneme assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axoneme IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cilia- and flagella-associated protein 43

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_033026475.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Channa argus male v1.0 Primary Assembly

Genomic

  1. NC_090197.1 Reference Channa argus male v1.0 Primary Assembly

    Range
    37979244..37998021 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_067518616.1 → XP_067374717.1  cilia- and flagella-associated protein 43

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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