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supt3h SPT3 homolog, SAGA and STAGA complex component [ Channa argus (northern snakehead) ]

Gene ID: 137131390, updated on 23-Sep-2024

Summary

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Gene symbol
supt3h
Gene description
SPT3 homolog, SAGA and STAGA complex component
Locus tag
Q8A73_001083
Gene type
protein coding
RefSeq status
MODEL
Organism
Channa argus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Anabantiformes; Channoidei; Channidae; Channa
Orthologs
human zebrafish all
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Genomic context

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See supt3h in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_08 current Channa argus male v1.0 (GCF_033026475.1) 1 NC_090197.1 (31177373..31187237)

Chromosome 1 - NC_090197.1Genomic Context describing neighboring genes Neighboring gene gap junction alpha-5 protein-like Neighboring gene uncharacterized LOC137131378 Neighboring gene follistatin-related protein 1-like Neighboring gene RUNX family transcription factor 2a Neighboring gene CDC5 cell division cycle 5-like (S. pombe) Neighboring gene N-ethylmaleimide-sensitive factor attachment protein, beta a Neighboring gene 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_090197.1 Chromosome 1 Reference Channa argus male v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription initiation protein SPT3 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_033026475.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Channa argus male v1.0 Primary Assembly

Genomic

  1. NC_090197.1 Reference Channa argus male v1.0 Primary Assembly

    Range
    31177373..31187237
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_067512571.1 → XP_067368672.1  transcription initiation protein SPT3 homolog isoform X1

  2. XM_067512579.1 → XP_067368680.1  transcription initiation protein SPT3 homolog isoform X2

  3. XM_067512589.1 → XP_067368690.1  transcription initiation protein SPT3 homolog isoform X3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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