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pnkp polynucleotide kinase 3'-phosphatase [ Pseudorasbora parva (stone moroko) ]

Gene ID: 137084536, updated on 21-Aug-2024

Summary

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Gene symbol
pnkp
Gene description
polynucleotide kinase 3'-phosphatase
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudorasbora parva
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Gobionidae; Sarcocheilichthyinae; Pseudorasbora
Orthologs
human zebrafish all
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Genomic context

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See pnkp in Genome Data Viewer
Location:
chromosome: 8
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current ASM2467924v1 (GCF_024679245.1) 8 NC_090179.1 (35372933..35378189, complement)

Chromosome 8 - NC_090179.1Genomic Context describing neighboring genes Neighboring gene calcium-activated chloride channel regulator 1-like Neighboring gene uncharacterized LOC137084535 Neighboring gene calcium-activated chloride channel regulator 1-like Neighboring gene calcium-activated chloride channel regulator 1-like Neighboring gene uncharacterized LOC137085261

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_090179.1 Chromosome 8 Reference ASM2467924v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables polynucleotide 3'-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional polynucleotide phosphatase/kinase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024679245.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2467924v1 Primary Assembly

Genomic

  1. NC_090179.1 Reference ASM2467924v1 Primary Assembly

    Range
    35372933..35378189 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_067450813.1 → XP_067306914.1  bifunctional polynucleotide phosphatase/kinase

Nucleotide Protein
Heading Accession and Version

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