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sfmbt1 Scm like with four mbt domains 1 [ Pseudorasbora parva (stone moroko) ]

Gene ID: 137058136, updated on 27-Aug-2024

Summary

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Gene symbol
sfmbt1
Gene description
Scm like with four mbt domains 1
See related
EnsemblRapid:ENSPPBG00000016144
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudorasbora parva
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Gobionidae; Sarcocheilichthyinae; Pseudorasbora
Orthologs
human zebrafish all
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Genomic context

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See sfmbt1 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_08 current ASM2467924v1 (GCF_024679245.1) 22 NC_090193.1 (21136840..21163636, complement)

Chromosome 22 - NC_090193.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137058090 Neighboring gene musculoskeletal, embryonic nuclear protein 1b Neighboring gene STIM activating enhance Neighboring gene protein kinase C, delta b Neighboring gene transfer RNA alanine (anticodon AGC) Neighboring gene FYVE, RhoGEF and PH domain containing 5a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_090193.1 Chromosome 22 Reference ASM2467924v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
scm-like with four MBT domains protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024679245.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2467924v1 Primary Assembly

Genomic

  1. NC_090193.1 Reference ASM2467924v1 Primary Assembly

    Range
    21136840..21163636 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_067431323.1 → XP_067287424.1  scm-like with four MBT domains protein 1 isoform X2

    Related
    ENSPPBP00000021132.1, ENSPPBT00000029871.1

  2. XM_067431322.1 → XP_067287423.1  scm-like with four MBT domains protein 1 isoform X1

    Related
    ENSPPBP00000021188.1, ENSPPBT00000029926.1
Nucleotide Protein
Heading Accession and Version

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