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spock2 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 [ Pseudorasbora parva (stone moroko) ]

Gene ID: 137044565, updated on 27-Aug-2024

Summary

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Gene symbol
spock2
Gene description
SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2
See related
EnsemblRapid:ENSPPBG00000019379
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudorasbora parva
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Gobionidae; Sarcocheilichthyinae; Pseudorasbora
Orthologs
human zebrafish all
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Genomic context

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See spock2 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current ASM2467924v1 (GCF_024679245.1) 17 NC_090188.1 (22138540..22187634)

Chromosome 17 - NC_090188.1Genomic Context describing neighboring genes Neighboring gene tRNA methyltransferase 2 homolog B Neighboring gene DnaJ heat shock protein family (Hsp40) member B12a Neighboring gene trypsin like peroxisomal matrix peptidase 1 Neighboring gene secretion associated, Ras related GTPase 1Ab

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_090188.1 Chromosome 17 Reference ASM2467924v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables collagen binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables extracellular matrix binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
testican-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024679245.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2467924v1 Primary Assembly

Genomic

  1. NC_090188.1 Reference ASM2467924v1 Primary Assembly

    Range
    22138540..22187634
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_067420619.1 → XP_067276720.1  testican-2

    Related
    ENSPPBP00000027493.1, ENSPPBT00000037125.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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