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trps1 trichorhinophalangeal syndrome I [ Chanodichthys erythropterus (predatory carp) ]

Gene ID: 137037677, updated on 27-Aug-2024

Summary

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Gene symbol
trps1
Gene description
trichorhinophalangeal syndrome I
See related
EnsemblRapid:ENSCEYG00000015611
Gene type
protein coding
RefSeq status
MODEL
Organism
Chanodichthys erythropterus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Xenocyprididae; Xenocypridinae; Chanodichthys
Orthologs
human zebrafish all
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Genomic context

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See trps1 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current ASM2448905v1 (GCF_024489055.1) 15 NC_090235.1 (18004332..18138399)

Chromosome 15 - NC_090235.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 3, subunit H, b Neighboring gene UTP23 small subunit processome component Neighboring gene CUB and Sushi multiple domains 3b Neighboring gene RAD21 cohesin complex component b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_090235.1 Chromosome 15 Reference ASM2448905v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger transcription factor Trps1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024489055.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2448905v1 Primary Assembly

Genomic

  1. NC_090235.1 Reference ASM2448905v1 Primary Assembly

    Range
    18004332..18138399
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_067411871.1 → XP_067267972.1  zinc finger transcription factor Trps1

  2. XM_067411872.1 → XP_067267973.1  zinc finger transcription factor Trps1

  3. XM_067411874.1 → XP_067267975.1  zinc finger transcription factor Trps1

  4. XM_067411876.1 → XP_067267977.1  zinc finger transcription factor Trps1

    Related
    ENSCEYP00000027420.1, ENSCEYT00000029553.1

  5. XM_067411873.1 → XP_067267974.1  zinc finger transcription factor Trps1

  6. XM_067411875.1 → XP_067267976.1  zinc finger transcription factor Trps1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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