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crtap cartilage associated protein [ Chanodichthys erythropterus (predatory carp) ]

Gene ID: 137037262, updated on 27-Aug-2024

Summary

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Gene symbol
crtap
Gene description
cartilage associated protein
See related
EnsemblRapid:ENSCEYG00000013620
Gene type
protein coding
RefSeq status
MODEL
Organism
Chanodichthys erythropterus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Xenocyprididae; Xenocypridinae; Chanodichthys
Orthologs
human zebrafish all
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Genomic context

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See crtap in Genome Data Viewer
Location:
chromosome: 15
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current ASM2448905v1 (GCF_024489055.1) 15 NC_090235.1 (19639224..19648670, complement)

Chromosome 15 - NC_090235.1Genomic Context describing neighboring genes Neighboring gene F-box and leucine-rich repeat protein 2 Neighboring gene sushi domain containing 5 Neighboring gene FKBP prolyl isomerase 9 Neighboring gene synaptotagmin-like 1 Neighboring gene counting factor associated protein D-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_090235.1 Chromosome 15 Reference ASM2448905v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables collagen binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in collagen fibril organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptidyl-proline hydroxylation to 3-hydroxy-L-proline IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cartilage-associated protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024489055.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2448905v1 Primary Assembly

Genomic

  1. NC_090235.1 Reference ASM2448905v1 Primary Assembly

    Range
    19639224..19648670 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_067411110.1 → XP_067267211.1  cartilage-associated protein

    Related
    ENSCEYP00000023881.1, ENSCEYT00000025690.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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