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supt3h SPT3 homolog, SAGA and STAGA complex component [ Chanodichthys erythropterus (predatory carp) ]

Gene ID: 137006194, updated on 27-Aug-2024

Summary

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Gene symbol
supt3h
Gene description
SPT3 homolog, SAGA and STAGA complex component
See related
EnsemblRapid:ENSCEYG00000010502
Gene type
protein coding
RefSeq status
MODEL
Organism
Chanodichthys erythropterus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Xenocyprididae; Xenocypridinae; Chanodichthys
Orthologs
human zebrafish all
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Genomic context

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See supt3h in Genome Data Viewer
Location:
chromosome: 18
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_08 current ASM2448905v1 (GCF_024489055.1) 18 NC_090238.1 (7641236..7788203)

Chromosome 18 - NC_090238.1Genomic Context describing neighboring genes Neighboring gene chloride intracellular channel 5a Neighboring gene uncharacterized LOC137006195 Neighboring gene RUNX family transcription factor 2a Neighboring gene CDC5 cell division cycle 5-like (S. pombe) Neighboring gene uncharacterized LOC137007085

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_090238.1 Chromosome 18 Reference ASM2448905v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription initiation protein SPT3 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024489055.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2448905v1 Primary Assembly

Genomic

  1. NC_090238.1 Reference ASM2448905v1 Primary Assembly

    Range
    7641236..7788203
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_067366769.1 → XP_067222870.1  transcription initiation protein SPT3 homolog isoform X2

    Related
    ENSCEYP00000017638.1, ENSCEYT00000019259.1

  2. XM_067366774.1 → XP_067222875.1  transcription initiation protein SPT3 homolog isoform X1

  3. XM_067366771.1 → XP_067222872.1  transcription initiation protein SPT3 homolog isoform X4

  4. XM_067366772.1 → XP_067222873.1  transcription initiation protein SPT3 homolog isoform X4

  5. XM_067366770.1 → XP_067222871.1  transcription initiation protein SPT3 homolog isoform X3

  6. XM_067366773.1 → XP_067222874.1  transcription initiation protein SPT3 homolog isoform X1

  7. XM_067366768.1 → XP_067222869.1  transcription initiation protein SPT3 homolog isoform X1

Nucleotide Protein
Heading Accession and Version

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