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sdf4 stromal cell derived factor 4 [ Amia calva (bowfin) ]

Gene ID: 136713942, updated on 25-Jul-2024

Summary

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Gene symbol
sdf4
Gene description
stromal cell derived factor 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Amia calva
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Amiiformes; Amiidae; Amia
Orthologs
human zebrafish all
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Genomic context

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See sdf4 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_07 current fAmiCal2.hap1 (GCF_036373705.1) 18 NC_089867.1 (28126714..28139647)

Chromosome 18 - NC_089867.1Genomic Context describing neighboring genes Neighboring gene C1q and TNF related 12 Neighboring gene UDP-Gal:betaGal beta 1,3-galactosyltransferase polypeptide 6 Neighboring gene zinc finger protein 271-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_089867.1 Chromosome 18 Reference fAmiCal2.hap1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium-ion regulated exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
45 kDa calcium-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036373705.1-RS_2024_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAmiCal2.hap1

Genomic

  1. NC_089867.1 Reference fAmiCal2.hap1

    Range
    28126714..28139647
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066691193.1 → XP_066547290.1  45 kDa calcium-binding protein

Nucleotide Protein
Heading Accession and Version

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