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SDF4 stromal cell derived factor 4 [ Eleutherodactylus coqui (Puerto Rican coqui) ]

Gene ID: 136632128, updated on 10-Oct-2024

Summary

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Gene symbol
SDF4
Gene description
stromal cell derived factor 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Eleutherodactylus coqui
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Hyloidea; Eleutherodactylidae; Eleutherodactylinae; Eleutherodactylus; Eleutherodactylus
Orthologs
human mouse all
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Genomic context

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See SDF4 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_07 current aEleCoq1.hap1 (GCF_035609145.1) 6 NC_089842.1 (49276952..49324657, complement)

Chromosome 6 - NC_089842.1Genomic Context describing neighboring genes Neighboring gene tumor necrosis factor receptor superfamily member 4-like Neighboring gene transfer RNA leucine (anticodon CAG) Neighboring gene solute carrier family 35 member E2B Neighboring gene cyclin-dependent kinase 11B-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_089842.1 Chromosome 6 Reference aEleCoq1.hap1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium-ion regulated exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
45 kDa calcium-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_035609145.1-RS_2024_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aEleCoq1.hap1

Genomic

  1. NC_089842.1 Reference aEleCoq1.hap1

    Range
    49276952..49324657 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066606762.1 → XP_066462859.1  45 kDa calcium-binding protein

    UniProtKB/TrEMBL
    A0A8J6F880
Nucleotide Protein Strain
Heading Accession and Version

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