U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ASPH aspartate beta-hydroxylase [ Zonotrichia leucophrys gambelii ]

Gene ID: 135444459, updated on 3-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
ASPH
Gene description
aspartate beta-hydroxylase
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia leucophrys gambelii (sub-species: gambelii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passerellidae; Zonotrichia
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ASPH in Genome Data Viewer
Location:
chromosome: 2
Exon count:
30
Annotation release Status Assembly Chr Location
RS_2024_04 current RI_Zleu_2.0 (GCF_028769735.1) 2 NC_088171.1 (116800221..116912206, complement)

Chromosome 2 - NC_088171.1Genomic Context describing neighboring genes Neighboring gene RAB2A, member RAS oncogene family Neighboring gene chromodomain helicase DNA binding protein 7 Neighboring gene clavesin 1 Neighboring gene sodium/potassium transporting ATPase interacting 3 Neighboring gene gamma-glutamyl hydrolase

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_088171.1 Chromosome 2 Reference RI_Zleu_2.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
aspartyl/asparaginyl beta-hydroxylase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_028769735.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference RI_Zleu_2.0

Genomic

  1. NC_088171.1 Reference RI_Zleu_2.0

    Range
    116800221..116912206 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_064706148.1 → XP_064562218.1  aspartyl/asparaginyl beta-hydroxylase isoform X3

  2. XM_064706152.1 → XP_064562222.1  aspartyl/asparaginyl beta-hydroxylase isoform X5

  3. XM_064706147.1 → XP_064562217.1  aspartyl/asparaginyl beta-hydroxylase isoform X2

  4. XM_064706146.1 → XP_064562216.1  aspartyl/asparaginyl beta-hydroxylase isoform X1

  5. XM_064706151.1 → XP_064562221.1  aspartyl/asparaginyl beta-hydroxylase isoform X4

  6. XM_064706153.1 → XP_064562223.1  aspartyl/asparaginyl beta-hydroxylase isoform X6

  7. XM_064706149.1 → XP_064562219.1  aspartyl/asparaginyl beta-hydroxylase isoform X4

  8. XM_064706154.1 → XP_064562224.1  aspartyl/asparaginyl beta-hydroxylase isoform X7

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.