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LOC135217174 carotenoid isomerooxygenase-like [ Macrobrachium nipponense ]

Gene ID: 135217174, updated on 5-Apr-2024

Summary

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Gene symbol
LOC135217174
Gene description
carotenoid isomerooxygenase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Macrobrachium nipponense
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Caridea; Palaemonoidea; Palaemonidae; Macrobrachium
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Genomic context

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See LOC135217174 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_03 current ASM1510439v2 (GCF_015104395.2) 7 NC_061109.1 (26237796..26285206, complement)

Chromosome 7 - NC_061109.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC135217560 Neighboring gene glutathione S-transferase 1-like Neighboring gene malectin-A-like Neighboring gene uncharacterized LOC135217483

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_061109.1 Chromosome 7 Reference ASM1510439v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-carotene 15,15'-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carotenoid dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carotene catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinal metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carotenoid isomerooxygenase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_015104395.2-RS_2024_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1510439v2 Primary Assembly

Genomic

  1. NC_061109.1 Reference ASM1510439v2 Primary Assembly

    Range
    26237796..26285206 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_064252896.1 → XP_064108966.1  carotenoid isomerooxygenase-like

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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