U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

MARCHF1 membrane associated ring-CH-type finger 1 [ Pogoniulus pusillus (Red-fronted tinkerbird) ]

Gene ID: 135178162, updated on 3-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
MARCHF1
Gene description
membrane associated ring-CH-type finger 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Pogoniulus pusillus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Coraciimorphae; Piciformes; Lybiidae; Pogoniulus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See MARCHF1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_03 current bPogPus1.pri (GCF_015220805.1) 9 NC_087272.1 (19308465..19564046, complement)

Chromosome 9 - NC_087272.1Genomic Context describing neighboring genes Neighboring gene neuropeptide Y receptor Y5 Neighboring gene translation machinery associated 16 homolog Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene uncharacterized LOC135178165 Neighboring gene transmembrane protein 192 Neighboring gene apelin receptor early endogenous ligand

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_087272.1 Chromosome 9 Reference bPogPus1.pri

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables MHC protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in antigen processing and presentation of peptide antigen via MHC class II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in early endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
E3 ubiquitin-protein ligase MARCHF1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_015220805.1-RS_2024_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bPogPus1.pri

Genomic

  1. NC_087272.1 Reference bPogPus1.pri

    Range
    19308465..19564046 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_064148762.1 → XP_064004832.1  E3 ubiquitin-protein ligase MARCHF1 isoform X1

  2. XM_064148761.1 → XP_064004831.1  E3 ubiquitin-protein ligase MARCHF1 isoform X1

  3. XM_064148760.1 → XP_064004830.1  E3 ubiquitin-protein ligase MARCHF1 isoform X1

  4. XM_064148765.1 → XP_064004835.1  E3 ubiquitin-protein ligase MARCHF1 isoform X2

  5. XM_064148763.1 → XP_064004833.1  E3 ubiquitin-protein ligase MARCHF1 isoform X1

  6. XM_064148764.1 → XP_064004834.1  E3 ubiquitin-protein ligase MARCHF1 isoform X1

  7. XM_064148766.1 → XP_064004836.1  E3 ubiquitin-protein ligase MARCHF1 isoform X3

  8. XM_064148768.1 → XP_064004838.1  E3 ubiquitin-protein ligase MARCHF1 isoform X5

  9. XM_064148767.1 → XP_064004837.1  E3 ubiquitin-protein ligase MARCHF1 isoform X4

Nucleotide Protein
Heading Accession and Version