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CDK5RAP1 CDK5 regulatory subunit associated protein 1 [ Pseudophryne corroboree (corroboree frog) ]

Gene ID: 135055852, updated on 29-Mar-2024

Summary

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Gene symbol
CDK5RAP1
Gene description
CDK5 regulatory subunit associated protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudophryne corroboree
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Myobatrachoidea; Myobatrachidae; Myobatrachinae; Pseudophryne
Orthologs
human mouse all
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Genomic context

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See CDK5RAP1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_02 current aPseCor3.hap2 (GCF_028390025.1) 3 NC_086446.1 (430686274..430848108)

Chromosome 3 - NC_086446.1Genomic Context describing neighboring genes Neighboring gene protein-glutamine gamma-glutamyltransferase E-like Neighboring gene 5S ribosomal RNA Neighboring gene KIAA1755 ortholog Neighboring gene bactericidal permeability-increasing protein-like Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_086446.1 Chromosome 3 Reference aPseCor3.hap2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 4 iron, 4 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables methylthiotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of cyclin-dependent protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tRNA modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mitochondrial tRNA methylthiotransferase CDK5RAP1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028390025.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aPseCor3.hap2

Genomic

  1. NC_086446.1 Reference aPseCor3.hap2

    Range
    430686274..430848108
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063960398.1 → XP_063816468.1  mitochondrial tRNA methylthiotransferase CDK5RAP1 isoform X2

  2. XM_063960396.1 → XP_063816466.1  mitochondrial tRNA methylthiotransferase CDK5RAP1 isoform X2

  3. XM_063960395.1 → XP_063816465.1  mitochondrial tRNA methylthiotransferase CDK5RAP1 isoform X2

  4. XM_063960397.1 → XP_063816467.1  mitochondrial tRNA methylthiotransferase CDK5RAP1 isoform X2

  5. XM_063960393.1 → XP_063816463.1  mitochondrial tRNA methylthiotransferase CDK5RAP1 isoform X2

  6. XM_063960399.1 → XP_063816469.1  mitochondrial tRNA methylthiotransferase CDK5RAP1 isoform X2

  7. XM_063960392.1 → XP_063816462.1  mitochondrial tRNA methylthiotransferase CDK5RAP1 isoform X1

  8. XM_063960400.1 → XP_063816470.1  mitochondrial tRNA methylthiotransferase CDK5RAP1 isoform X3

Nucleotide Protein
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