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LOC134873839 TNF receptor-associated factor 2-like [ Eleginops maclovinus (Patagonian blennie) ]

Gene ID: 134873839, updated on 10-Oct-2024

Summary

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Gene symbol
LOC134873839
Gene description
TNF receptor-associated factor 2-like
Locus tag
PBY51_003508
See related
EnsemblRapid:ENSEMLG00005006540
Gene type
protein coding
RefSeq status
MODEL
Organism
Eleginops maclovinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Eleginopidae; Eleginops
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Genomic context

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See LOC134873839 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_03 current JC_Emac_rtc_rv5 (GCF_036324505.1) 12 NC_086360.1 (3526333..3543851)

Chromosome 12 - NC_086360.1Genomic Context describing neighboring genes Neighboring gene IMP U3 small nucleolar ribonucleoprotein 4 Neighboring gene RAB, member RAS oncogene family-like 6b Neighboring gene tenascin Cb Neighboring gene beta-1,3-galactosyltransferase 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_086360.1 Chromosome 12 Reference JC_Emac_rtc_rv5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tumor necrosis factor receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of NF-kappaB transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K63-linked ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tumor necrosis factor-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TNF receptor-associated factor 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036324505.1-RS_2024_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference JC_Emac_rtc_rv5 Primary Assembly

Genomic

  1. NC_086360.1 Reference JC_Emac_rtc_rv5 Primary Assembly

    Range
    3526333..3543851
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063897720.1 → XP_063753790.1  TNF receptor-associated factor 2-like

    UniProtKB/TrEMBL
    A0AAN7XV06
    Related
    ENSEMLP00005018405.1, ENSEMLT00005018559.1
Nucleotide Protein
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Gene LinkOut

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