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traf2b Tnf receptor-associated factor 2b [ Eleginops maclovinus (Patagonian blennie) ]

Gene ID: 134868188, updated on 10-Oct-2024

Summary

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Gene symbol
traf2b
Gene description
Tnf receptor-associated factor 2b
Locus tag
PBY51_023531
See related
EnsemblRapid:ENSEMLG00005018171
Gene type
protein coding
RefSeq status
MODEL
Organism
Eleginops maclovinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Eleginopidae; Eleginops
Orthologs
zebrafish all
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Genomic context

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See traf2b in Genome Data Viewer
Location:
chromosome: 8
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_03 current JC_Emac_rtc_rv5 (GCF_036324505.1) 8 NC_086356.1 (12265409..12279137, complement)

Chromosome 8 - NC_086356.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134868793 Neighboring gene F-box and WD repeat domain containing 5 Neighboring gene coenzyme Q4 homolog (S. cerevisiae) Neighboring gene B-box and SPRY domain containing Neighboring gene zinc finger, MYND-type containing 19

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_086356.1 Chromosome 8 Reference JC_Emac_rtc_rv5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tumor necrosis factor receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of NF-kappaB transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K63-linked ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tumor necrosis factor-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TNF receptor-associated factor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036324505.1-RS_2024_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference JC_Emac_rtc_rv5 Primary Assembly

Genomic

  1. NC_086356.1 Reference JC_Emac_rtc_rv5 Primary Assembly

    Range
    12265409..12279137 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063889127.1 → XP_063745197.1  TNF receptor-associated factor 2

    UniProtKB/TrEMBL
    A0AAN7X361

  2. XM_063889128.1 → XP_063745198.1  TNF receptor-associated factor 2

    UniProtKB/TrEMBL
    A0AAN7X361
    Related
    ENSEMLP00005050566.1, ENSEMLT00005052001.1
Nucleotide Protein
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