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pleca plectin a [ Trichomycterus rosablanca ]

Gene ID: 134332920, updated on 29-Mar-2024

Summary

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Gene symbol
pleca
Gene description
plectin a
Gene type
protein coding
RefSeq status
MODEL
Organism
Trichomycterus rosablanca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Trichomycteridae; Trichomycterus
Orthologs
zebrafish all
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Genomic context

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See pleca in Genome Data Viewer
Location:
chromosome: 2
Exon count:
43
Annotation release Status Assembly Chr Location
RS_2024_02 current fTriRos1.hap1 (GCF_030014385.1) 2 NC_085989.1 (34639563..34811473)

Chromosome 2 - NC_085989.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 74 Neighboring gene eukaryotic translation initiation factor 3, subunit E, b Neighboring gene epiplakin 1 Neighboring gene F-box and leucine-rich repeat protein 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_085989.1 Chromosome 2 Reference fTriRos1.hap1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014385.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTriRos1.hap1

Genomic

  1. NC_085989.1 Reference fTriRos1.hap1

    Range
    34639563..34811473
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063014810.1 → XP_062870880.1  plectin a isoform X8

  2. XM_063014835.1 → XP_062870905.1  plectin a isoform X9

  3. XM_063014755.1 → XP_062870825.1  plectin a isoform X1

  4. XM_063014761.1 → XP_062870831.1  plectin a isoform X2

  5. XM_063014768.1 → XP_062870838.1  plectin a isoform X3

  6. XM_063014818.1 → XP_062870888.1  plectin a isoform X7

  7. XM_063014827.1 → XP_062870897.1  plectin a isoform X7

  8. XM_063014786.1 → XP_062870856.1  plectin a isoform X5

  9. XM_063014795.1 → XP_062870865.1  plectin a isoform X6

  10. XM_063014777.1 → XP_062870847.1  plectin a isoform X4

  11. XM_063014802.1 → XP_062870872.1  plectin a isoform X7

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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