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si:dkey-121b10.7 heparan sulfate glucosamine 3-O-sulfotransferase 3B1 [ Trichomycterus rosablanca ]

Gene ID: 134328687, updated on 29-Mar-2024

Summary

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Gene symbol
si:dkey-121b10.7
Gene description
heparan sulfate glucosamine 3-O-sulfotransferase 3B1
Gene type
protein coding
RefSeq status
MODEL
Organism
Trichomycterus rosablanca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Trichomycteridae; Trichomycterus
Orthologs
zebrafish all
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Genomic context

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See si:dkey-121b10.7 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current fTriRos1.hap1 (GCF_030014385.1) 15 NC_086002.1 (5723215..5749513)

Chromosome 15 - NC_086002.1Genomic Context describing neighboring genes Neighboring gene LON peptidase N-terminal domain and ring finger 2 Neighboring gene mitogen-activated protein kinase kinase kinase kinase 4-like Neighboring gene golgin subfamily A member 6-like protein 22 Neighboring gene T-cell-specific surface glycoprotein CD28

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_086002.1 Chromosome 15 Reference fTriRos1.hap1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate glucosamine 3-O-sulfotransferase 3B1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014385.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTriRos1.hap1

Genomic

  1. NC_086002.1 Reference fTriRos1.hap1

    Range
    5723215..5749513
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063009858.1 → XP_062865928.1  heparan sulfate glucosamine 3-O-sulfotransferase 3B1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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