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capn3a calpain 3a, (p94) [ Trichomycterus rosablanca ]

Gene ID: 134325767, updated on 29-Mar-2024

Summary

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Gene symbol
capn3a
Gene description
calpain 3a, (p94)
Gene type
protein coding
RefSeq status
MODEL
Organism
Trichomycterus rosablanca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Trichomycteridae; Trichomycterus
Orthologs
human zebrafish all
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Genomic context

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See capn3a in Genome Data Viewer
Location:
chromosome: 13
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_02 current fTriRos1.hap1 (GCF_030014385.1) 13 NC_086000.1 (18334497..18352148)

Chromosome 13 - NC_086000.1Genomic Context describing neighboring genes Neighboring gene tau tubulin kinase 2a Neighboring gene glucosidase, alpha; neutral C Neighboring gene zinc finger protein 106a Neighboring gene proton activated chloride channel 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_086000.1 Chromosome 13 Reference fTriRos1.hap1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014385.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTriRos1.hap1

Genomic

  1. NC_086000.1 Reference fTriRos1.hap1

    Range
    18334497..18352148
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063008002.1 → XP_062864072.1  calpain-3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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