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rrp8 ribosomal RNA processing 8 [ Syngnathoides biaculeatus (alligator pipefish) ]

Gene ID: 133504634, updated on 10-Apr-2024

Summary

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Gene symbol
rrp8
Gene description
ribosomal RNA processing 8
See related
EnsemblRapid:ENSSBIG00005004479
Gene type
protein coding
RefSeq status
MODEL
Organism
Syngnathoides biaculeatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Syngnathoides
Orthologs
human zebrafish all
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Genomic context

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See rrp8 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_12 current ASM1980259v1 (GCF_019802595.1) 8 NC_084647.1 (15600089..15607475, complement)

Chromosome 8 - NC_084647.1Genomic Context describing neighboring genes Neighboring gene diablo IAP-binding mitochondrial protein-like Neighboring gene nectin cell adhesion molecule 3a Neighboring gene integrin-linked protein kinase Neighboring gene amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_084647.1 Chromosome 8 Reference ASM1980259v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables methylated histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to glucose starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in rDNA heterochromatin formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by glucose IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin silencing complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of rDNA heterochromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein rrp8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_019802595.1-RS_2023_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1980259v1 Primary Assembly

Genomic

  1. NC_084647.1 Reference ASM1980259v1 Primary Assembly

    Range
    15600089..15607475 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_061827095.1 → XP_061683079.1  uncharacterized protein rrp8

    Related
    ENSSBIP00005009184.1, ENSSBIT00005009441.1
Nucleotide Protein
Heading Accession and Version

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