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ano5a anoctamin 5a [ Syngnathoides biaculeatus (alligator pipefish) ]

Gene ID: 133502611, updated on 10-Apr-2024

Summary

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Gene symbol
ano5a
Gene description
anoctamin 5a
See related
EnsemblRapid:ENSSBIG00005001030
Gene type
protein coding
RefSeq status
MODEL
Organism
Syngnathoides biaculeatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Syngnathoides
Orthologs
human zebrafish all
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Genomic context

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See ano5a in Genome Data Viewer
Location:
chromosome: 6
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2023_12 current ASM1980259v1 (GCF_019802595.1) 6 NC_084645.1 (2379528..2404191, complement)

Chromosome 6 - NC_084645.1Genomic Context describing neighboring genes Neighboring gene FA complementation group F Neighboring gene solute carrier family 17 member 6a Neighboring gene uncharacterized LOC133502616 Neighboring gene anoctamin-9 Neighboring gene single immunoglobulin and toll-interleukin 1 receptor (TIR) domain

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_084645.1 Chromosome 6 Reference ASM1980259v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chloride channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chloride transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
anoctamin-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_019802595.1-RS_2023_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1980259v1 Primary Assembly

Genomic

  1. NC_084645.1 Reference ASM1980259v1 Primary Assembly

    Range
    2379528..2404191 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_061823616.1 → XP_061679600.1  anoctamin-5 isoform X1

    Related
    ENSSBIP00005008843.1, ENSSBIT00005009098.1

  2. XM_061823618.1 → XP_061679602.1  anoctamin-5 isoform X2

    Related
    ENSSBIP00005008810.1, ENSSBIT00005009065.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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