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plecb plectin b [ Syngnathoides biaculeatus (alligator pipefish) ]

Gene ID: 133501039, updated on 10-Apr-2024

Summary

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Gene symbol
plecb
Gene description
plectin b
See related
EnsemblRapid:ENSSBIG00005008538
Gene type
protein coding
RefSeq status
MODEL
Organism
Syngnathoides biaculeatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Syngnathoides
Orthologs
zebrafish all
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Genomic context

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See plecb in Genome Data Viewer
Location:
chromosome: 5
Exon count:
38
Annotation release Status Assembly Chr Location
RS_2023_12 current ASM1980259v1 (GCF_019802595.1) 5 NC_084644.1 (21609817..21760887)

Chromosome 5 - NC_084644.1Genomic Context describing neighboring genes Neighboring gene hepcidin-like Neighboring gene 5S ribosomal RNA Neighboring gene microtubule actin crosslinking factor 1b Neighboring gene solute carrier family 52 member 3-2b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_084644.1 Chromosome 5 Reference ASM1980259v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_019802595.1-RS_2023_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1980259v1 Primary Assembly

Genomic

  1. NC_084644.1 Reference ASM1980259v1 Primary Assembly

    Range
    21609817..21760887
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_061820437.1 → XP_061676421.1  plectin isoform X4

  2. XM_061820439.1 → XP_061676423.1  plectin isoform X5

    Related
    ENSSBIP00005023642.1, ENSSBIT00005024485.1

  3. XM_061820444.1 → XP_061676428.1  plectin isoform X10

  4. XM_061820442.1 → XP_061676426.1  plectin isoform X8

  5. XM_061820443.1 → XP_061676427.1  plectin isoform X9

  6. XM_061820436.1 → XP_061676420.1  plectin isoform X3

  7. XM_061820434.1 → XP_061676418.1  plectin isoform X1

  8. XM_061820435.1 → XP_061676419.1  plectin isoform X2

  9. XM_061820440.1 → XP_061676424.1  plectin isoform X6

  10. XM_061820441.1 → XP_061676425.1  plectin isoform X7

    Related
    ENSSBIP00005023619.1, ENSSBIT00005024462.1
Nucleotide Protein
Heading Accession and Version

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