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sgca sarcoglycan, alpha [ Syngnathoides biaculeatus (alligator pipefish) ]

Gene ID: 133495097, updated on 29-Mar-2024

Summary

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Gene symbol
sgca
Gene description
sarcoglycan, alpha
Gene type
protein coding
RefSeq status
MODEL
Organism
Syngnathoides biaculeatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Syngnathoides
Orthologs
zebrafish all
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Genomic context

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See sgca in Genome Data Viewer
Location:
chromosome: 22
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_12 current ASM1980259v1 (GCF_019802595.1) 22 NC_084661.1 (10146392..10163542)

Chromosome 22 - NC_084661.1Genomic Context describing neighboring genes Neighboring gene PR domain containing 9 Neighboring gene uncharacterized LOC133495099 Neighboring gene protein phosphatase 1, regulatory subunit 9Bb Neighboring gene collagen, type I, alpha 1b Neighboring gene inactive all-trans-retinol 13,14-reductase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_084661.1 Chromosome 22 Reference ASM1980259v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_019802595.1-RS_2023_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1980259v1 Primary Assembly

Genomic

  1. NC_084661.1 Reference ASM1980259v1 Primary Assembly

    Range
    10146392..10163542
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_061809316.1 → XP_061665300.1  alpha-sarcoglycan isoform X3

  2. XM_061809314.1 → XP_061665298.1  alpha-sarcoglycan isoform X3

  3. XM_061809318.1 → XP_061665302.1  alpha-sarcoglycan isoform X4

  4. XM_061809315.1 → XP_061665299.1  alpha-sarcoglycan isoform X3

  5. XM_061809319.1 → XP_061665303.1  alpha-sarcoglycan isoform X4

  6. XM_061809312.1 → XP_061665296.1  alpha-sarcoglycan isoform X1

  7. XM_061809313.1 → XP_061665297.1  alpha-sarcoglycan isoform X2

  8. XM_061809317.1 → XP_061665301.1  alpha-sarcoglycan isoform X3

Nucleotide Protein
Heading Accession and Version

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