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sgcd sarcoglycan, delta (dystrophin-associated glycoprotein) [ Syngnathoides biaculeatus (alligator pipefish) ]

Gene ID: 133491794, updated on 10-Apr-2024

Summary

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Gene symbol
sgcd
Gene description
sarcoglycan, delta (dystrophin-associated glycoprotein)
See related
EnsemblRapid:ENSSBIG00005007505
Gene type
protein coding
RefSeq status
MODEL
Organism
Syngnathoides biaculeatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Syngnathoides
Orthologs
human zebrafish all
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Genomic context

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See sgcd in Genome Data Viewer
Location:
chromosome: 18
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_12 current ASM1980259v1 (GCF_019802595.1) 18 NC_084657.1 (12600348..12741453)

Chromosome 18 - NC_084657.1Genomic Context describing neighboring genes Neighboring gene gem (nuclear organelle) associated protein 5 Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene rho GTPase-activating protein 7 Neighboring gene uncharacterized LOC133492009

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_084657.1 Chromosome 18 Reference ASM1980259v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_019802595.1-RS_2023_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1980259v1 Primary Assembly

Genomic

  1. NC_084657.1 Reference ASM1980259v1 Primary Assembly

    Range
    12600348..12741453
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_061803392.1 → XP_061659376.1  delta-sarcoglycan isoform X2

  2. XM_061803393.1 → XP_061659377.1  delta-sarcoglycan isoform X3

    Related
    ENSSBIP00005015582.1, ENSSBIT00005016091.1

  3. XM_061803394.1 → XP_061659378.1  delta-sarcoglycan isoform X4

    Related
    ENSSBIP00005015581.1, ENSSBIT00005016090.1

  4. XM_061803397.1 → XP_061659381.1  delta-sarcoglycan isoform X5

    Related
    ENSSBIP00005015580.1, ENSSBIT00005016089.1

  5. XM_061803396.1 → XP_061659380.1  delta-sarcoglycan isoform X4

  6. XM_061803391.1 → XP_061659375.1  delta-sarcoglycan isoform X1

    Related
    ENSSBIP00005015578.1, ENSSBIT00005016087.1
Nucleotide Protein
Heading Accession and Version

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