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pleca plectin a [ Cololabis saira (Pacific saury) ]

Gene ID: 133460612, updated on 9-Jul-2024

Summary

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Gene symbol
pleca
Gene description
plectin a
See related
EnsemblRapid:ENSLTZG00000020570
Gene type
protein coding
RefSeq status
MODEL
Organism
Cololabis saira
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Belonidae; Cololabis
Orthologs
zebrafish all
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Genomic context

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See pleca in Genome Data Viewer
Location:
chromosome: 15
Exon count:
44
Annotation release Status Assembly Chr Location
RS_2023_12 current fColSai1.1 (GCF_033807715.1) 15 NC_084601.1 (29698694..29842271)

Chromosome 15 - NC_084601.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 74 Neighboring gene eukaryotic translation initiation factor 3, subunit E, b Neighboring gene epiplakin 1 Neighboring gene F-box and leucine-rich repeat protein 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_084601.1 Chromosome 15 Reference fColSai1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_033807715.1-RS_2023_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fColSai1.1 Primary Assembly

Genomic

  1. NC_084601.1 Reference fColSai1.1 Primary Assembly

    Range
    29698694..29842271
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_061741258.1 → XP_061597242.1  plectin a isoform X1

  2. XM_061741261.1 → XP_061597245.1  plectin a isoform X3

  3. XM_061741260.1 → XP_061597244.1  plectin a isoform X2

    Related
    ENSLTZP00000022425.1, ENSLTZT00000034786.1

  4. XM_061741262.1 → XP_061597246.1  plectin a isoform X4

    Related
    ENSLTZP00000022421.1, ENSLTZT00000034782.1

  5. XM_061741259.1 → XP_061597243.1  plectin a isoform X1

  6. XM_061741269.1 → XP_061597253.1  plectin a isoform X10

    Related
    ENSLTZP00000022411.1, ENSLTZT00000034772.1

  7. XM_061741272.1 → XP_061597256.1  plectin a isoform X13

  8. XM_061741273.1 → XP_061597257.1  plectin a isoform X14

  9. XM_061741275.1 → XP_061597259.1  plectin a isoform X16

    Related
    ENSLTZP00000022410.1, ENSLTZT00000034771.1

  10. XM_061741276.1 → XP_061597260.1  plectin a isoform X17

  11. XM_061741274.1 → XP_061597258.1  plectin a isoform X15

  12. XM_061741268.1 → XP_061597252.1  plectin a isoform X9

  13. XM_061741270.1 → XP_061597254.1  plectin a isoform X11

    Related
    ENSLTZP00000022385.1, ENSLTZT00000034746.1

  14. XM_061741263.1 → XP_061597247.1  plectin a isoform X5

  15. XM_061741264.1 → XP_061597248.1  plectin a isoform X6

    Related
    ENSLTZP00000022370.1, ENSLTZT00000034731.1

  16. XM_061741265.1 → XP_061597249.1  plectin a isoform X7

  17. XM_061741266.1 → XP_061597250.1  plectin a isoform X8

  18. XM_061741271.1 → XP_061597255.1  plectin a isoform X12

    Related
    ENSLTZP00000022369.1, ENSLTZT00000034730.1
Nucleotide Protein
Heading Accession and Version

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