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LOC133423421 aspartyl/asparaginyl beta-hydroxylase-like [ Cololabis saira (Pacific saury) ]

Gene ID: 133423421, updated on 9-Jul-2024

Summary

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Gene symbol
LOC133423421
Gene description
aspartyl/asparaginyl beta-hydroxylase-like
See related
EnsemblRapid:ENSLTZG00000023569
Gene type
protein coding
RefSeq status
MODEL
Organism
Cololabis saira
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Belonidae; Cololabis
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC133423421 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2023_12 current fColSai1.1 (GCF_033807715.1) 22 NC_084608.1 (36572481..36633644)

Chromosome 22 - NC_084608.1Genomic Context describing neighboring genes Neighboring gene THAP domain-containing protein 6-like Neighboring gene sodium channel protein type 3 subunit alpha-like Neighboring gene clavesin 2 Neighboring gene RIO kinase 3 (yeast)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_084608.1 Chromosome 22 Reference fColSai1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_033807715.1-RS_2023_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fColSai1.1 Primary Assembly

Genomic

  1. NC_084608.1 Reference fColSai1.1 Primary Assembly

    Range
    36572481..36633644
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_061713595.1 → XP_061569579.1  aspartyl/asparaginyl beta-hydroxylase-like

    Related
    ENSLTZP00000030966.1, ENSLTZT00000043429.1
Nucleotide Protein
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Gene LinkOut

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