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LOC133420343 toll-like receptor 2 type-2 [ Cololabis saira (Pacific saury) ]

Gene ID: 133420343, updated on 9-Jul-2024

Summary

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Gene symbol
LOC133420343
Gene description
toll-like receptor 2 type-2
See related
EnsemblRapid:ENSLTZG00000015479
Gene type
protein coding
RefSeq status
MODEL
Organism
Cololabis saira
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Belonidae; Cololabis
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Genomic context

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See LOC133420343 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_12 current fColSai1.1 (GCF_033807715.1) 20 NC_084606.1 (5953899..5968629)

Chromosome 20 - NC_084606.1Genomic Context describing neighboring genes Neighboring gene ring finger protein 175 Neighboring gene toll-like receptor 2 type-2 Neighboring gene toll-like receptor 2 Neighboring gene toll-like receptor 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_084606.1 Chromosome 20 Reference fColSai1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables triacyl lipopeptide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
toll-like receptor 2; toll-like receptor 2 type-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_033807715.1-RS_2023_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fColSai1.1 Primary Assembly

Genomic

  1. NC_084606.1 Reference fColSai1.1 Primary Assembly

    Range
    5953899..5968629
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_061710023.1 → XP_061566007.1  toll-like receptor 2 type-2 isoform X1

    Related
    ENSLTZP00000009365.1, ENSLTZT00000021196.1

  2. XM_061710024.1 → XP_061566008.1  toll-like receptor 2 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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