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capn3b calpain 3b [ Cololabis saira (Pacific saury) ]

Gene ID: 133418611, updated on 9-Jul-2024

Summary

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Gene symbol
capn3b
Gene description
calpain 3b
See related
EnsemblRapid:ENSLTZG00000026990
Gene type
protein coding
RefSeq status
MODEL
Organism
Cololabis saira
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Belonidae; Cololabis
Orthologs
zebrafish all
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Genomic context

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See capn3b in Genome Data Viewer
Location:
chromosome: 18
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2023_12 current fColSai1.1 (GCF_033807715.1) 18 NC_084604.1 (20957567..20989995)

Chromosome 18 - NC_084604.1Genomic Context describing neighboring genes Neighboring gene macoilin-1 Neighboring gene nuclear receptor binding protein 1 Neighboring gene zinc finger protein 106-like Neighboring gene churchill domain containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_084604.1 Chromosome 18 Reference fColSai1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_033807715.1-RS_2023_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fColSai1.1 Primary Assembly

Genomic

  1. NC_084604.1 Reference fColSai1.1 Primary Assembly

    Range
    20957567..20989995
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_061707397.1 → XP_061563381.1  calpain-3b isoform X1

    Related
    ENSLTZP00000040086.1, ENSLTZT00000053021.1

  2. XM_061707398.1 → XP_061563382.1  calpain-3b isoform X2

    Related
    ENSLTZP00000040085.1, ENSLTZT00000053020.1

  3. XM_061707399.1 → XP_061563383.1  calpain-3b isoform X3

    Related
    ENSLTZP00000040008.1, ENSLTZT00000052943.1
Nucleotide Protein
Heading Accession and Version

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