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LOC133342411 calpain-3-like [ Lethenteron reissneri (Far Eastern brook lamprey) ]

Gene ID: 133342411, updated on 21-Dec-2023

Summary

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Gene symbol
LOC133342411
Gene description
calpain-3-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Lethenteron reissneri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Cyclostomata; Hyperoartia; Petromyzontiformes; Petromyzontidae; Lethenteron
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Genomic context

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See LOC133342411 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2023_12 current ASM1570882v1 (GCF_015708825.1) 14 NC_083792.1 (12540500..12600282, complement)

Chromosome 14 - NC_083792.1Genomic Context describing neighboring genes Neighboring gene papilin-like Neighboring gene RNA binding motif protein 25 Neighboring gene protein numb homolog Neighboring gene U6 spliceosomal RNA Neighboring gene neutral alpha-glucosidase C-like Neighboring gene cyclin dependent kinase like 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_083792.1 Chromosome 14 Reference ASM1570882v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: calpain-3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_015708825.1-RS_2023_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1570882v1 Primary Assembly

Genomic

  1. NC_083792.1 Reference ASM1570882v1 Primary Assembly

    Range
    12540500..12600282 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_061551577.1 → XP_061407561.1  LOW QUALITY PROTEIN: calpain-3-like

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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