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LOC133341428 calpain-9-like [ Lethenteron reissneri (Far Eastern brook lamprey) ]

Gene ID: 133341428, updated on 21-Dec-2023

Summary

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Gene symbol
LOC133341428
Gene description
calpain-9-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Lethenteron reissneri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Cyclostomata; Hyperoartia; Petromyzontiformes; Petromyzontidae; Lethenteron
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Genomic context

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See LOC133341428 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2023_12 current ASM1570882v1 (GCF_015708825.1) 11 NC_083789.1 (9312198..9353788)

Chromosome 11 - NC_083789.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 87A-like Neighboring gene kynurenine 3-monooxygenase Neighboring gene calpain-9-like Neighboring gene glycogen phosphorylase, brain form-like Neighboring gene glyceronephosphate O-acyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_083789.1 Chromosome 11 Reference ASM1570882v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-9-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_015708825.1-RS_2023_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1570882v1 Primary Assembly

Genomic

  1. NC_083789.1 Reference ASM1570882v1 Primary Assembly

    Range
    9312198..9353788
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_061550050.1 → XP_061406034.1  calpain-9-like isoform X2

  2. XM_061550049.1 → XP_061406033.1  calpain-9-like isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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