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pleca plectin a [ Tachysurus vachellii ]

Gene ID: 132864192, updated on 6-Jun-2024

Summary

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Gene symbol
pleca
Gene description
plectin a
Gene type
protein coding
RefSeq status
MODEL
Organism
Tachysurus vachellii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Bagridae; Tachysurus
Orthologs
zebrafish all
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Genomic context

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See pleca in Genome Data Viewer
Location:
chromosome: 21
Exon count:
42
Annotation release Status Assembly Chr Location
RS_2023_11 current HZAU_Pvac_v1 (GCF_030014155.1) 21 NC_083480.1 (12172864..12280838)

Chromosome 21 - NC_083480.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 74 Neighboring gene eukaryotic translation initiation factor 3, subunit E, b Neighboring gene epiplakin 1 Neighboring gene solute carrier family 52 member 2 Neighboring gene F-box and leucine-rich repeat protein 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_083480.1 Chromosome 21 Reference HZAU_Pvac_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014155.1-RS_2023_11

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HZAU_Pvac_v1 Primary Assembly

Genomic

  1. NC_083480.1 Reference HZAU_Pvac_v1 Primary Assembly

    Range
    12172864..12280838
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_060897483.1 → XP_060753466.1  plectin a isoform X1

    UniProtKB/TrEMBL
    A0AA88MEQ6

  2. XM_060897485.1 → XP_060753468.1  plectin a isoform X3

    UniProtKB/TrEMBL
    A0AA88MEQ6

  3. XM_060897484.1 → XP_060753467.1  plectin a isoform X2

    UniProtKB/TrEMBL
    A0AA88MEQ6

  4. XM_060897486.1 → XP_060753469.1  plectin a isoform X4

    UniProtKB/TrEMBL
    A0AA88MEQ6

  5. XM_060897493.1 → XP_060753476.1  plectin a isoform X10

    UniProtKB/TrEMBL
    A0AA88MEQ6

  6. XM_060897494.1 → XP_060753477.1  plectin a isoform X11

    UniProtKB/TrEMBL
    A0AA88MEQ6

  7. XM_060897496.1 → XP_060753479.1  plectin a isoform X13

    UniProtKB/TrEMBL
    A0AA88MEQ6

  8. XM_060897497.1 → XP_060753480.1  plectin a isoform X14

    UniProtKB/TrEMBL
    A0AA88MEQ6

  9. XM_060897490.1 → XP_060753473.1  plectin a isoform X7

    UniProtKB/TrEMBL
    A0AA88MEQ6

  10. XM_060897492.1 → XP_060753475.1  plectin a isoform X9

    UniProtKB/TrEMBL
    A0AA88MEQ6

  11. XM_060897495.1 → XP_060753478.1  plectin a isoform X12

    UniProtKB/TrEMBL
    A0AA88MEQ6

  12. XM_060897487.1 → XP_060753470.1  plectin a isoform X5

    UniProtKB/TrEMBL
    A0AA88MEQ6

  13. XM_060897489.1 → XP_060753472.1  plectin a isoform X6

    UniProtKB/TrEMBL
    A0AA88MEQ6

  14. XM_060897491.1 → XP_060753474.1  plectin a isoform X8

    UniProtKB/TrEMBL
    A0AA88MEQ6
Nucleotide Protein
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