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capn3a calpain 3a, (p94) [ Tachysurus vachellii ]

Gene ID: 132852566, updated on 29-Mar-2024

Summary

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Gene symbol
capn3a
Gene description
calpain 3a, (p94)
Gene type
protein coding
RefSeq status
MODEL
Organism
Tachysurus vachellii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Bagridae; Tachysurus
Orthologs
human zebrafish all
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Genomic context

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See capn3a in Genome Data Viewer
Location:
chromosome: 10
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2023_11 current HZAU_Pvac_v1 (GCF_030014155.1) 10 NC_083469.1 (15343890..15354163, complement)

Chromosome 10 - NC_083469.1Genomic Context describing neighboring genes Neighboring gene neudesin neurotrophic factor Neighboring gene proton activated chloride channel 1 Neighboring gene zinc finger protein 106a Neighboring gene uncharacterized LOC132852627 Neighboring gene glucosidase, alpha; neutral C Neighboring gene tau tubulin kinase 2a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_083469.1 Chromosome 10 Reference HZAU_Pvac_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014155.1-RS_2023_11

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HZAU_Pvac_v1 Primary Assembly

Genomic

  1. NC_083469.1 Reference HZAU_Pvac_v1 Primary Assembly

    Range
    15343890..15354163 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_060879827.1 → XP_060735810.1  calpain-3

Nucleotide Protein
Heading Accession and Version

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