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si:dkey-219c10.4 high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A [ Tachysurus vachellii ]

Gene ID: 132850637, updated on 3-Apr-2024

Summary

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Gene symbol
si:dkey-219c10.4
Gene description
high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A
Gene type
protein coding
RefSeq status
MODEL
Organism
Tachysurus vachellii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Bagridae; Tachysurus
Orthologs
zebrafish all
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Genomic context

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See si:dkey-219c10.4 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_11 current HZAU_Pvac_v1 (GCF_030014155.1) 8 NC_083467.1 (11898485..11908450, complement)

Chromosome 8 - NC_083467.1Genomic Context describing neighboring genes Neighboring gene signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 Neighboring gene calcium channel, voltage-dependent, beta 4a subunit Neighboring gene small nucleolar RNA ACA64 Neighboring gene small nucleolar RNA ACA64 Neighboring gene nucleolar protein interacting with the FHA domain of MKI67

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_083467.1 Chromosome 8 Reference HZAU_Pvac_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3',5'-cyclic-GMP phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cGMP catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cGMP-mediated signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014155.1-RS_2023_11

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HZAU_Pvac_v1 Primary Assembly

Genomic

  1. NC_083467.1 Reference HZAU_Pvac_v1 Primary Assembly

    Range
    11898485..11908450 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_060877286.1 → XP_060733269.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A

    UniProtKB/TrEMBL
    A0AA88T0R3
Nucleotide Protein
Heading Accession and Version

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