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sec13 SEC13 homolog, nuclear pore and COPII coat complex component [ Tachysurus vachellii ]

Gene ID: 132838300, updated on 3-Apr-2024

Summary

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Gene symbol
sec13
Gene description
SEC13 homolog, nuclear pore and COPII coat complex component
Gene type
protein coding
RefSeq status
MODEL
Organism
Tachysurus vachellii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Bagridae; Tachysurus
Orthologs
human zebrafish all
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Genomic context

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See sec13 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_11 current HZAU_Pvac_v1 (GCF_030014155.1) 22 NC_083481.1 (7050782..7056859)

Chromosome 22 - NC_083481.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein L32 Neighboring gene cullin-associated and neddylation-dissociated 2 (putative) Neighboring gene RNA-binding protein 42-like Neighboring gene uncharacterized LOC132837722

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_083481.1 Chromosome 22 Reference HZAU_Pvac_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in COPII-coated vesicle budding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of TOR signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein exit from endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein import into nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of COPII vesicle coat IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear pore outer ring IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein SEC13 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014155.1-RS_2023_11

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HZAU_Pvac_v1 Primary Assembly

Genomic

  1. NC_083481.1 Reference HZAU_Pvac_v1 Primary Assembly

    Range
    7050782..7056859
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_060858564.1 → XP_060714547.1  protein SEC13 homolog

    UniProtKB/TrEMBL
    A0AA88LQT1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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