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LOC132744805 toll-like receptor 4 [ Ruditapes philippinarum (Manila clam) ]

Gene ID: 132744805, updated on 30-Nov-2023

Summary

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Gene symbol
LOC132744805
Gene description
toll-like receptor 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Ruditapes philippinarum
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Heteroconchia; Euheterodonta; Imparidentia; Neoheterodontei; Venerida; Veneroidea; Veneridae; Ruditapes
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Genomic context

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See LOC132744805 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current ASM2657151v2 (GCF_026571515.1) Unplaced Scaffold NW_026855919.1 (10667..14566, complement)

NW_026855919.1Genomic Context describing neighboring genes Neighboring gene acylglycerol kinase, mitochondrial-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026855919 Unplaced Scaffold Reference ASM2657151v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
toll-like receptor 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_026571515.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2657151v2 Primary Assembly

Genomic

  1. NW_026855919.1 Reference ASM2657151v2 Primary Assembly

    Range
    10667..14566 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_060733582.1 → XP_060589565.1  toll-like receptor 4

Nucleotide Protein
Heading Accession and Version

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