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MARCHF1 membrane associated ring-CH-type finger 1 [ Panthera onca (jaguar) ]

Gene ID: 132691953, updated on 29-Mar-2024

Summary

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Gene symbol
MARCHF1
Gene description
membrane associated ring-CH-type finger 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Panthera onca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera
Orthologs
human mouse all
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Genomic context

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See MARCHF1 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_10 current Panthera_onca_HiC (GCF_028533385.1) 11 NC_083305.1 (59698807..60509388)

Chromosome 11 - NC_083305.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132691950 Neighboring gene uncharacterized LOC132691951 Neighboring gene putative ribosomal protein uL10-like Neighboring gene uncharacterized LOC132691957 Neighboring gene uncharacterized protein C3orf38 homolog Neighboring gene translation machinery associated 16 homolog Neighboring gene uncharacterized LOC132693230 Neighboring gene transketolase like 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_083305.1 Chromosome 11 Reference Panthera_onca_HiC Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables MHC protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in antigen processing and presentation of peptide antigen via MHC class II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in early endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase MARCHF1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028533385.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Panthera_onca_HiC Primary Assembly

Genomic

  1. NC_083305.1 Reference Panthera_onca_HiC Primary Assembly

    Range
    59698807..60509388
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_060653840.1 → XP_060509823.1  E3 ubiquitin-protein ligase MARCHF1 isoform X3

  2. XM_060653837.1 → XP_060509820.1  E3 ubiquitin-protein ligase MARCHF1 isoform X2

  3. XM_060653846.1 → XP_060509829.1  E3 ubiquitin-protein ligase MARCHF1 isoform X8

  4. XM_060653841.1 → XP_060509824.1  E3 ubiquitin-protein ligase MARCHF1 isoform X3

  5. XM_060653839.1 → XP_060509822.1  E3 ubiquitin-protein ligase MARCHF1 isoform X2

  6. XM_060653838.1 → XP_060509821.1  E3 ubiquitin-protein ligase MARCHF1 isoform X2

  7. XM_060653836.1 → XP_060509819.1  E3 ubiquitin-protein ligase MARCHF1 isoform X1

  8. XM_060653843.1 → XP_060509826.1  E3 ubiquitin-protein ligase MARCHF1 isoform X5

  9. XM_060653842.1 → XP_060509825.1  E3 ubiquitin-protein ligase MARCHF1 isoform X4

  10. XM_060653844.1 → XP_060509827.1  E3 ubiquitin-protein ligase MARCHF1 isoform X6

  11. XM_060653845.1 → XP_060509828.1  E3 ubiquitin-protein ligase MARCHF1 isoform X7

Nucleotide Protein
Heading Accession and Version