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LOC132445416 STARR-positive B cell enhancer mm9_chrX:166408204-166408505 [ Mus musculus (house mouse) ]

Gene ID: 132445416, updated on 10-Feb-2024

Summary

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Gene symbol
LOC132445416
Gene description
STARR-positive B cell enhancer mm9_chrX:166408204-166408505
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This locus, which is located in the pseudoautosomal region (PAR) of chromosomes X and Y, was identified as a putative B cell regulatory element by FAIRE-seq (formaldehyde-assisted isolation of regulatory elements sequencing), and was validated as an enhancer by STARR-seq (self-transcribing active regulatory region sequencing) in lipopolysaccharide-activated mouse splenic B cells. [provided by RefSeq, Oct 2023]
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Genomic context

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See LOC132445416 in Genome Data Viewer
Location:
X;Y
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (168753268..168753569)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene midline 1 Neighboring gene STARR-seq mESC enhancer starr_48284 Neighboring gene capping actin protein of muscle Z-line subunit alpha 1B Neighboring gene predicted gene, 54065 Neighboring gene STARR-positive B cell enhancer mm9_chrX:166407829-166408130 Neighboring gene RIKEN cDNA G530011O06 gene Neighboring gene STARR-positive B cell enhancer mm9_chrX:166410801-166411102 Neighboring gene STARR-positive B cell enhancer mm9_chrX:166413309-166413610 Neighboring gene STARR-positive B cell enhancer mm9_chrX:166414802-166415103 Neighboring gene STARR-positive B cell enhancer mm9_chrX:166415421-166415722 Neighboring gene STARR-positive B cell enhancer mm9_chrX:166417053-166417354 Neighboring gene STARR-positive B cell enhancer mm9_chrX:166417609-166417910 Neighboring gene STARR-positive B cell enhancer mm9_chrX:166419073-166419374 Neighboring gene STARR-positive B cell enhancer mm9_chrX:166420805-166421106 Neighboring gene STARR-positive B cell enhancer mm9_chrX:166422120-166422421 Neighboring gene predicted gene 15247

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_241834.1 

    Range
    101..402
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    168753268..168753569
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version