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LOC132444154 STARR-positive B cell enhancer mm9_chr16:84646473-84646774 [ Mus musculus (house mouse) ]

Gene ID: 132444154, updated on 10-Feb-2024

Summary

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Gene symbol
LOC132444154
Gene description
STARR-positive B cell enhancer mm9_chr16:84646473-84646774
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This genomic region was identified as a putative B cell regulatory element by FAIRE-seq (formaldehyde-assisted isolation of regulatory elements sequencing), and was validated as an enhancer by STARR-seq (self-transcribing active regulatory region sequencing) in lipopolysaccharide-activated mouse splenic B cells. [provided by RefSeq, Oct 2023]
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Genomic context

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See LOC132444154 in Genome Data Viewer
Location:
chromosome: 16
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (84443116..84443417)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E5554 Neighboring gene predicted gene, 32073 Neighboring gene STARR-seq mESC enhancer starr_41361 Neighboring gene STARR-positive B cell enhancer ABC_E1495 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:84584241-84584424 Neighboring gene STARR-seq mESC enhancer starr_41362 Neighboring gene STARR-positive B cell enhancer ABC_E215 Neighboring gene transmembrane protein 126A pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E952 Neighboring gene ubiquitin-fold modifier conjugating enzyme 1 pseudogene Neighboring gene RIKEN cDNA 4930529L06 gene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_240572.1 

    Range
    101..402
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    84443116..84443417
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version