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LOC132444070 STARR-positive B cell enhancer mm9_chr16:49982479-49982780 [ Mus musculus (house mouse) ]

Gene ID: 132444070, updated on 10-Feb-2024

Summary

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Gene symbol
LOC132444070
Gene description
STARR-positive B cell enhancer mm9_chr16:49982479-49982780
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This genomic region was identified as a putative B cell regulatory element by FAIRE-seq (formaldehyde-assisted isolation of regulatory elements sequencing), and was validated as an enhancer by STARR-seq (self-transcribing active regulatory region sequencing) in lipopolysaccharide-activated mouse splenic B cells. [provided by RefSeq, Oct 2023]
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Genomic context

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See LOC132444070 in Genome Data Viewer
Location:
chromosome: 16
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (49802729..49803030)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene predicted gene 4633 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:49856157-49856266 Neighboring gene CD47 antigen (Rh-related antigen, integrin-associated signal transducer) Neighboring gene STARR-positive B cell enhancer mm9_chr16:49907578-49907878 Neighboring gene STARR-seq mESC enhancer starr_40973 Neighboring gene predicted gene 5486 Neighboring gene STARR-positive B cell enhancer ABC_E7456 Neighboring gene STARR-positive B cell enhancer mm9_chr16:49971104-49971405 Neighboring gene STARR-positive B cell enhancer mm9_chr16:49970625-49970926 Neighboring gene predicted gene, 19723 Neighboring gene predicted gene 6936 Neighboring gene STARR-positive B cell enhancer ABC_E5545 Neighboring gene STARR-seq mESC enhancer starr_40976 Neighboring gene predicted gene 4827 Neighboring gene STARR-seq mESC enhancer starr_40978 Neighboring gene predicted gene, 32101 Neighboring gene STARR-seq mESC enhancer starr_40979 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_240488.1 

    Range
    101..402
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    49802729..49803030
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version