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LOC132443073 STARR-positive B cell enhancer ABC_E4081 [ Mus musculus (house mouse) ]

Gene ID: 132443073, updated on 10-Feb-2024

Summary

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Gene symbol
LOC132443073
Gene description
STARR-positive B cell enhancer ABC_E4081
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This genomic region was identified as a putative B cell regulatory element by FAIRE-seq (formaldehyde-assisted isolation of regulatory elements sequencing), and was validated as an enhancer by STARR-seq (self-transcribing active regulatory region sequencing) in lipopolysaccharide-activated mouse splenic B cells. [provided by RefSeq, Oct 2023]
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Genomic context

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See LOC132443073 in Genome Data Viewer
Location:
chromosome: 13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (81032890..81033191)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene ribosomal protein L17 pseudogene Neighboring gene STARR-seq mESC enhancer starr_35103 Neighboring gene STARR-seq mESC enhancer starr_35104 Neighboring gene 40S ribosomal protein S8 pseudogene Neighboring gene STARR-seq mESC enhancer starr_35105 Neighboring gene STARR-seq mESC enhancer starr_35106 Neighboring gene STARR-seq mESC enhancer starr_35107 Neighboring gene STARR-seq mESC enhancer starr_35108 Neighboring gene STARR-seq mESC enhancer starr_35109 Neighboring gene STARR-seq mESC enhancer starr_35110 Neighboring gene STARR-positive B cell enhancer ABC_E7255 Neighboring gene STARR-positive B cell enhancer ABC_E7256 Neighboring gene STARR-seq mESC enhancer starr_35112 Neighboring gene STARR-positive B cell enhancer ABC_E3087 Neighboring gene RIKEN cDNA 5430425K12 gene Neighboring gene STARR-seq mESC enhancer starr_35115 Neighboring gene arrestin domain containing 3 Neighboring gene predicted gene 4211

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_239495.1 

    Range
    101..402
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    81032890..81033191
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version