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ttll4 tubulin tyrosine ligase-like family, member 4 [ Hypanus sabinus (Atlantic stingray) ]

Gene ID: 132392980, updated on 10-Apr-2024

Summary

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Gene symbol
ttll4
Gene description
tubulin tyrosine ligase-like family, member 4
See related
EnsemblRapid:ENSZXQG00005001236
Gene type
protein coding
RefSeq status
MODEL
Organism
Hypanus sabinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Batoidea; Myliobatiformes; Dasyatidae; Hypanus
Orthologs
human zebrafish all
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Genomic context

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See ttll4 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2023_09 current sHypSab1.hap1 (GCF_030144855.1) 4 NC_082709.1 (88220786..88323602, complement)

Chromosome 4 - NC_082709.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 23 member 3-like Neighboring gene 5'-AMP-activated protein kinase subunit gamma-1-like Neighboring gene cyclin Pas1/PHO80 domain containing 1 Neighboring gene wingless-type MMTV integration site family, member 6b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_082709.1 Chromosome 4 Reference sHypSab1.hap1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tubulin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tubulin-glutamic acid ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in microtubule cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyglutamylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tubulin polyglutamylase TTLL4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030144855.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference sHypSab1.hap1

Genomic

  1. NC_082709.1 Reference sHypSab1.hap1

    Range
    88220786..88323602 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059967630.1 → XP_059823613.1  tubulin polyglutamylase TTLL4 isoform X5

  2. XM_059967628.1 → XP_059823611.1  tubulin polyglutamylase TTLL4 isoform X3

  3. XM_059967629.1 → XP_059823612.1  tubulin polyglutamylase TTLL4 isoform X4

  4. XM_059967625.1 → XP_059823608.1  tubulin polyglutamylase TTLL4 isoform X1

    Related
    ENSZXQP00005003049.1, ENSZXQT00005003194.1

  5. XM_059967627.1 → XP_059823610.1  tubulin polyglutamylase TTLL4 isoform X2

    Related
    ENSZXQP00005003047.1, ENSZXQT00005003192.1

  6. XM_059967626.1 → XP_059823609.1  tubulin polyglutamylase TTLL4 isoform X1

  7. XM_059967631.1 → XP_059823614.1  tubulin polyglutamylase TTLL4 isoform X6

RNA

  1. XR_009511703.1 RNA Sequence

    Related
    ENSZXQT00005003182.1
Nucleotide Protein
Heading Accession and Version

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