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LOC132178988 rhamnogalacturonan I rhamnosyltransferase 1 [ Corylus avellana ]

Gene ID: 132178988, updated on 19-Sep-2023

Summary

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Gene symbol
LOC132178988
Gene description
rhamnogalacturonan I rhamnosyltransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Corylus avellana
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Betulaceae; Corylus
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Genomic context

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See LOC132178988 in Genome Data Viewer
Location:
chromosome: ca4
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_09 current CavTom2PMs-1.0 (GCF_901000735.1) ca4 NC_081544.1 (31879682..31886380)

Chromosome ca4 - NC_081544.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase VIK Neighboring gene transmembrane emp24 domain-containing protein p24delta9-like Neighboring gene ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic Neighboring gene phosphate transporter PHO1 homolog 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_081544.1 Chromosome ca4 Reference CavTom2PMs-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rhamnogalacturonan I rhamnosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_901000735.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CavTom2PMs-1.0 Primary Assembly

Genomic

  1. NC_081544.1 Reference CavTom2PMs-1.0 Primary Assembly

    Range
    31879682..31886380
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059591588.1 → XP_059447571.1  rhamnogalacturonan I rhamnosyltransferase 1

RNA

  1. XR_009439878.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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