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LOC132173977 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5 [ Corylus avellana ]

Gene ID: 132173977, updated on 19-Sep-2023

Summary

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Gene symbol
LOC132173977
Gene description
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Corylus avellana
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Betulaceae; Corylus
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Genomic context

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See LOC132173977 in Genome Data Viewer
Location:
chromosome: ca3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_09 current CavTom2PMs-1.0 (GCF_901000735.1) ca3 NC_081543.1 (12441869..12448489)

Chromosome ca3 - NC_081543.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like Neighboring gene uncharacterized LOC132176313 Neighboring gene ABC transporter B family member 2-like Neighboring gene transcription factor MYB39

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_081543.1 Chromosome ca3 Reference CavTom2PMs-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_901000735.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CavTom2PMs-1.0 Primary Assembly

Genomic

  1. NC_081543.1 Reference CavTom2PMs-1.0 Primary Assembly

    Range
    12441869..12448489
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059585688.1 → XP_059441671.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

  2. XM_059585689.1 → XP_059441672.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases