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LOC132173334 cellulose synthase-like protein D3 [ Corylus avellana ]

Gene ID: 132173334, updated on 19-Sep-2023

Summary

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Gene symbol
LOC132173334
Gene description
cellulose synthase-like protein D3
Gene type
protein coding
RefSeq status
MODEL
Organism
Corylus avellana
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Betulaceae; Corylus
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Genomic context

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See LOC132173334 in Genome Data Viewer
Location:
chromosome: ca3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_09 current CavTom2PMs-1.0 (GCF_901000735.1) ca3 NC_081543.1 (12302573..12308165)

Chromosome ca3 - NC_081543.1Genomic Context describing neighboring genes Neighboring gene glycerol-3-phosphate acyltransferase ATS12, chloroplastic Neighboring gene uncharacterized LOC132173332 Neighboring gene probable xyloglucan endotransglucosylase/hydrolase protein 30 Neighboring gene UV-B-induced protein At3g17800, chloroplastic

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_081543.1 Chromosome ca3 Reference CavTom2PMs-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and analysis of the paclitaxel-producing endophytic fungus Penicillium aurantiogriseum NRRL 62431. Yang Y, et al. BMC Genomics, 2014 Jan 25. PMID 24460898, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase-like protein D3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_901000735.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CavTom2PMs-1.0 Primary Assembly

Genomic

  1. NC_081543.1 Reference CavTom2PMs-1.0 Primary Assembly

    Range
    12302573..12308165
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059584811.1 → XP_059440794.1  cellulose synthase-like protein D3

  2. XM_059584812.1 → XP_059440795.1  cellulose synthase-like protein D3

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases