U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CHRNE cholinergic receptor nicotinic epsilon subunit [ Mustela nigripes (black-footed ferret) ]

Gene ID: 132004471, updated on 10-Apr-2024

Summary

Go to the top of the page Help
Gene symbol
CHRNE
Gene description
cholinergic receptor nicotinic epsilon subunit
See related
EnsemblRapid:ENSMNGG00000015567
Gene type
protein coding
RefSeq status
MODEL
Organism
Mustela nigripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Mustela
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CHRNE in Genome Data Viewer
Location:
chromosome: 16
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_09 current MUSNIG.SB6536 (GCF_022355385.1) 16 NC_081572.1 (58695621..58703610, complement)

Chromosome 16 - NC_081572.1Genomic Context describing neighboring genes Neighboring gene phospholipase D2 Neighboring gene misshapen like kinase 1 Neighboring gene chromosome 16 C17orf107 homolog Neighboring gene glycoprotein Ib platelet subunit alpha Neighboring gene solute carrier family 25 member 11 Neighboring gene ring finger protein 167

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_081572.1 Chromosome 16 Reference MUSNIG.SB6536 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylcholine-gated monoatomic cation-selective channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monoatomic ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of membrane potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
acetylcholine receptor subunit epsilon

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_022355385.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MUSNIG.SB6536 Primary Assembly

Genomic

  1. NC_081572.1 Reference MUSNIG.SB6536 Primary Assembly

    Range
    58695621..58703610 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059380936.1 → XP_059236919.1  acetylcholine receptor subunit epsilon isoform X1

  2. XM_059380938.1 → XP_059236921.1  acetylcholine receptor subunit epsilon isoform X3

  3. XM_059380942.1 → XP_059236925.1  acetylcholine receptor subunit epsilon isoform X6

  4. XM_059380937.1 → XP_059236920.1  acetylcholine receptor subunit epsilon isoform X2

  5. XM_059380939.1 → XP_059236922.1  acetylcholine receptor subunit epsilon isoform X4

  6. XM_059380941.1 → XP_059236924.1  acetylcholine receptor subunit epsilon isoform X5

  7. XM_059380943.1 → XP_059236926.1  acetylcholine receptor subunit epsilon isoform X7

    Related
    ENSMNGP00000022235.1, ENSMNGT00000027976.1

RNA

  1. XR_009400519.1 RNA Sequence

  2. XR_009400518.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.