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NFKB1 nuclear factor kappa B subunit 1 [ Mustela nigripes (black-footed ferret) ]

Gene ID: 132001757, updated on 10-Apr-2024

Summary

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Gene symbol
NFKB1
Gene description
nuclear factor kappa B subunit 1
See related
EnsemblRapid:ENSMNGG00000021096
Gene type
protein coding
RefSeq status
MODEL
Organism
Mustela nigripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Mustela
Orthologs
human mouse all
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Genomic context

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See NFKB1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2023_09 current MUSNIG.SB6536 (GCF_022355385.1) 1 NC_081557.1 (165499562..165620229)

Chromosome 1 - NC_081557.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 39 member 8 Neighboring gene uncharacterized LOC132014131 Neighboring gene uncharacterized LOC132014136 Neighboring gene mannosidase beta

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_081557.1 Chromosome 1 Reference MUSNIG.SB6536 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in non-canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to cytokine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear factor NF-kappa-B p105 subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022355385.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MUSNIG.SB6536 Primary Assembly

Genomic

  1. NC_081557.1 Reference MUSNIG.SB6536 Primary Assembly

    Range
    165499562..165620229
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059376633.1 → XP_059232616.1  nuclear factor NF-kappa-B p105 subunit isoform X4

    Related
    ENSMNGP00000030184.1, ENSMNGT00000037946.1

  2. XM_059376611.1 → XP_059232594.1  nuclear factor NF-kappa-B p105 subunit isoform X1

  3. XM_059376617.1 → XP_059232600.1  nuclear factor NF-kappa-B p105 subunit isoform X2

  4. XM_059376625.1 → XP_059232608.1  nuclear factor NF-kappa-B p105 subunit isoform X3

Nucleotide Protein
Heading Accession and Version

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