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LOC131886718 protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1-like [ Tigriopus californicus ]

Gene ID: 131886718, updated on 23-Oct-2023

Summary

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Gene symbol
LOC131886718
Gene description
protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1-like
Locus tag
TCAL_11082
Gene type
protein coding
RefSeq status
MODEL
Organism
Tigriopus californicus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Hexanauplia; Copepoda; Harpacticoida; Harpacticidae; Tigriopus
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Genomic context

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See LOC131886718 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_08 current Tcal_SD_v2.1 (GCF_007210705.1) 9 NC_081448.1 (11117011..11156352)

Chromosome 9 - NC_081448.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC131887172 Neighboring gene calcium-dependent secretion activator 1 Neighboring gene uncharacterized LOC131886615 Neighboring gene ubiquitin carboxyl-terminal hydrolase MINDY-2-like Neighboring gene baeyer-Villiger monooxygenase-like Neighboring gene baeyer-Villiger monooxygenase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_081448.1 Chromosome 9 Reference Tcal_SD_v2.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Loss of the HIF pathway in a widely distributed intertidal crustacean, the copepod Tigriopus californicus. Graham AM, et al. Proc Natl Acad Sci U S A, 2019 Jun 25. PMID 31182611, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_007210705.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Tcal_SD_v2.1

Genomic

  1. NC_081448.1 Reference Tcal_SD_v2.1

    Range
    11117011..11156352
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059235116.1 → XP_059091099.1  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1-like

    UniProtKB/TrEMBL
    A0A553NYZ5
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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