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bark protein bark beetle [ Tigriopus californicus ]

Gene ID: 131877140, updated on 3-Jul-2024

Summary

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Gene symbol
bark
Gene description
protein bark beetle
Locus tag
TCAL_01609
Gene type
protein coding
RefSeq status
MODEL
Organism
Tigriopus californicus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Hexanauplia; Copepoda; Harpacticoida; Harpacticidae; Tigriopus
Orthologs
fruit fly all
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Genomic context

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See bark in Genome Data Viewer
Location:
chromosome: 2
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_08 current Tcal_SD_v2.1 (GCF_007210705.1) 2 NC_081441.1 (7192462..7202786)

Chromosome 2 - NC_081441.1Genomic Context describing neighboring genes Neighboring gene superkiller complex protein 8-like Neighboring gene ninjurin-1-like Neighboring gene uncharacterized LOC131877160 Neighboring gene helicase-like transcription factor Neighboring gene RWD domain-containing protein 2A-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_081441.1 Chromosome 2 Reference Tcal_SD_v2.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Loss of the HIF pathway in a widely distributed intertidal crustacean, the copepod Tigriopus californicus. Graham AM, et al. Proc Natl Acad Sci U S A, 2019 Jun 25. PMID 31182611, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein bark beetle-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_007210705.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Tcal_SD_v2.1

Genomic

  1. NC_081441.1 Reference Tcal_SD_v2.1

    Range
    7192462..7202786
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059222737.1 → XP_059078720.1  protein bark beetle-like

    UniProtKB/TrEMBL
    A0A553PAP1
Nucleotide Protein
Heading Accession and Version

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